Dana Pe'er: search on Z-Library

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1

Characterization of cell fate probabilities in single-cell data with Palantir

Setty, Manu, Kiseliovas, Vaidotas, Levine, Jacob, Gayoso, Adam, Mazutis, Linas, Pe’er, Dana

Journal:

Nature Biotechnology

Year:

2019

Language:

english

File:

PDF, 2.93 MB

english, 2019

2

viSNE enables visualization of high dimensional single-cell data and reveals phenotypic heterogeneity of leukemia

Amir, El-ad David, Davis, Kara L, Tadmor, Michelle D, Simonds, Erin F, Levine, Jacob H, Bendall, Sean C, Shenfeld, Daniel K, Krishnaswamy, Smita, Nolan, Garry P, Pe'er, Dana

Journal:

Nature Biotechnology

Year:

2013

Language:

english

File:

PDF, 2.10 MB

english, 2013

3

Using Bayesian Networks to Analyze Expression Data

Friedman, Nir, Linial, Michal, Nachman, Iftach, Pe'er, Dana

Journal:

Journal of Computational Biology

Year:

2000

Language:

english

File:

PDF, 2.77 MB

english, 2000

4

Distinct Cellular Mechanisms Underlie Anti-CTLA-4 and Anti-PD-1 Checkpoint Blockade

Wei, Spencer C., Levine, Jacob H., Cogdill, Alexandria P., Zhao, Yang, Anang, Nana-Ama A.S., Andrews, Miles C., Sharma, Padmanee, Wang, Jing, Wargo, Jennifer A., Pe’er, Dana, Allison, James P.

Journal:

Year:

2017

Language:

english

File:

PDF, 19.71 MB

english, 2017

5

Author Correction: Characterization of cell fate probabilities in single-cell data with Palantir

Setty, Manu, Kiseliovas, Vaidotas, Levine, Jacob, Gayoso, Adam, Mazutis, Linas, Pe’er, Dana

Journal:

Nature Biotechnology

Year:

2019

File:

PDF, 470 KB

2019

6

Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data

Segal, Eran, Shapira, Michael, Regev, Aviv, Pe'er, Dana, Botstein, David, Koller, Daphne, Friedman, Nir

Journal:

Nature Genetics

Year:

2003

Language:

english

File:

PDF, 2.19 MB

english, 2003

7

Wishbone identifies bifurcating developmental trajectories from single-cell data

Setty, Manu, Tadmor, Michelle D, Reich-Zeliger, Shlomit, Angel, Omer, Salame, Tomer Meir, Kathail, Pooja, Choi, Kristy, Bendall, Sean, Friedman, Nir, Pe'er, Dana

Journal:

Nature Biotechnology

Year:

2016

Language:

english

File:

PDF, 3.37 MB

english, 2016

8

Single-Cell Trajectory Detection Uncovers Progression and Regulatory Coordination in Human B Cell Development

Bendall, Sean C., Davis, Kara L., Amir, El-ad David, Tadmor, Michelle D., Simonds, Erin F., Chen, Tiffany J., Shenfeld, Daniel K., Nolan, Garry P., Pe’er, Dana

Journal:

Year:

2014

Language:

english

File:

PDF, 1.94 MB

english, 2014

9

Functional Genomic Landscape of Human Breast Cancer Drivers, Vulnerabilities, and Resistance

Marcotte, Richard, Sayad, Azin, Brown, Kevin R., Sanchez-Garcia, Felix, Reimand, Jüri, Haider, Maliha, Virtanen, Carl, Bradner, James E., Bader, Gary D., Mills, Gordon B., Pe’er, Dana, Moffat, Jason,

Journal:

Year:

2016

Language:

english

File:

PDF, 6.14 MB

english, 2016

10

[ACM Press the 50th Annual Design Automation Conference - Austin, Texas (2013.05.29-2013.06.07)] Proceedings of the 50th Annual Design Automation Conference on - DAC '13 - Can CAD cure cancer?

Krishnaswamy, Smita, Bodenmiller, Bernd, Pe'er, Dana

Year:

2013

Language:

english

File:

PDF, 484 KB

english, 2013

11

Interferon α/β Enhances the Cytotoxic Response of MEK Inhibition in Melanoma

Litvin, Oren, Schwartz, Sarit, Wan, Zhenmao, Schild, Tanya, Rocco, Mark, Oh, Nul Loren, Chen, Bo-Juen, Goddard, Noel, Pratilas, Christine, Pe’er, Dana

Journal:

Year:

2015

Language:

english

File:

PDF, 3.99 MB

english, 2015

12

Harnessing gene expression to identify the genetic basis of drug resistance

Chen, Bo-Juen, Causton, Helen C, Mancenido, Denesy, Goddard, Noel L, Perlstein, Ethan O, Pe'er, Dana

Journal:

Molecular Systems Biology

Year:

2009

Language:

english

File:

PDF, 1.55 MB

english, 2009

13

Frontiers in cancer immunotherapyâa symposium report

Cable, Jennifer, Greenbaum, Benjamin, Pe'er, Dana, Bollard, Catherine M., Bruni, Sofia, Griffin, Matthew E., Allison, James P., Wu, Catherine J., Subudhi, Sumit K., Mardis, Elaine R., Brentjens, Renie

Journal:

Annals of the New York Academy of Sciences

Year:

2020

File:

PDF, 304 KB

2020

14

Principles and Strategies for Developing Network Models in Cancer

Dana Pe'er, Nir Hacohen

Journal:

Year:

2011

Language:

english

File:

PDF, 678 KB

english, 2011

15

Scalable microfluidics for single-cell RNA printing and sequencing

Bose, Sayantan, Wan, Zhenmao, Carr, Ambrose, Rizvi, Abbas, Vieira, Gregory, Pe’er, Dana, Sims, Peter

Journal:

Year:

2015

Language:

english

File:

PDF, 4.55 MB

english, 2015

16

PhenoGraph and viSNE Facilitate the Identification of Abnormal T-Cell Populations in Routine Clinical Flow Cytometric Data

DiGiuseppe, Joseph A., Cardinali, Jolene L., Rezuke, William N., Pe'er, Dana

Journal:

Cytometry Part B: Clinical Cytometry

Year:

2017

Language:

english

File:

PDF, 1.76 MB

english, 2017

17

Environmental Stresses Disrupt Telomere Length Homeostasis

Romano, Gal Hagit, Harari, Yaniv, Yehuda, Tal, Podhorzer, Ariel, Rubinstein, Linda, Shamir, Ron, Gottlieb, Assaf, Silberberg, Yael, Pe'er, Dana, Ruppin, Eytan, Sharan, Roded, Kupiec, Martin, Zhou, Jin

Journal:

Year:

2013

Language:

english

File:

PDF, 3.43 MB

english, 2013

18

Measuring Signaling and RNA-Seq in the Same Cell Links Gene Expression to Dynamic Patterns of NF-κB Activation

Lane, Keara, Van Valen, David, DeFelice, Mialy M., Macklin, Derek N., Kudo, Takamasa, Jaimovich, Ariel, Carr, Ambrose, Meyer, Tobias, Pe'er, Dana, Boutet, Stéphane C., Covert, Markus W.

Journal:

Year:

2017

Language:

english

File:

PDF, 3.20 MB

english, 2017

19

Mapping Differentiation under Mixed Culture Conditions Reveals a Tunable Continuum of T Cell Fates

Antebi, Yaron E., Reich-Zeliger, Shlomit, Hart, Yuval, Mayo, Avi, Eizenberg, Inbal, Rimer, Jacob, Putheti, Prabhakar, Pe'er, Dana, Friedman, Nir, Bhandoola, Avinash

Journal:

Year:

2013

Language:

english

File:

PDF, 1.52 MB

english, 2013

20

Broadening horizons: holistic viewpoints from the Biology of Genomes

Ambrose Carr,Dana Pe’er

Journal:

Year:

2014

Language:

english

File:

PDF, 110 KB

english, 2014

21

Highly multiplexed profiling of single-cell effector functions reveals deep functional heterogeneity in response to pathogenic ligands

Lu, Yao, Xue, Qiong, Eisele, Markus R., Sulistijo, Endah S., Brower, Kara, Han, Lin, Amir, El-ad David, Pe’er, Dana, Miller-Jensen, Kathryn, Fan, Rong

Journal:

Proceedings of the National Academy of Sciences

Year:

2015

Language:

english

File:

PDF, 2.08 MB

english, 2015

22

Context Sensitive Modeling of Cancer Drug Sensitivity

Chen, Bo-Juen, Litvin, Oren, Ungar, Lyle, Pe’er, Dana, Vera, Julio

Journal:

Year:

2015

Language:

english

File:

PDF, 1.12 MB

english, 2015

23

Learning time-varying information flow from single-cell epithelial to mesenchymal transition data

Krishnaswamy, Smita, Zivanovic, Nevena, Sharma, Roshan, Pe’er, Dana, Bodenmiller, Bernd, Ahmad, Aamir

Journal:

Year:

2018

Language:

english

File:

PDF, 3.22 MB

english, 2018

24

High-resolution analysis of DNA regulatory elements by synthetic saturation mutagenesis

Patwardhan, Rupali P, Lee, Choli, Litvin, Oren, Young, David L, Pe'er, Dana, Shendure, Jay

Journal:

Nature Biotechnology

Year:

2009

Language:

english

File:

PDF, 382 KB

english, 2009

25

Using systems and structure biology tools to dissect cellular phenotypes

Floratos, Aris, Honig, Barry, Pe'er, Dana, Califano, Andrea

Journal:

Journal of the American Medical Informatics Association

Year:

2012

Language:

english

File:

PDF, 516 KB

english, 2012

26

Natural Genetic Variation Reveals Key Features of Epigenetic and Transcriptional Memory in Virus-Specific CD8 T Cells

van der Veeken, Joris, Zhong, Yi, Sharma, Roshan, Mazutis, Linas, Dao, Phuong, Pe’er, Dana, Leslie, Christina S., Rudensky, Alexander Y.

Journal:

Year:

2019

File:

PDF, 5.39 MB

2019

27

Genotype-Environment Interactions Reveal Causal Pathways That Mediate Genetic Effects on Phenotype

Gagneur, Julien, Stegle, Oliver, Zhu, Chenchen, Jakob, Petra, Tekkedil, Manu M., Aiyar, Raeka S., Schuon, Ann-Kathrin, Pe'er, Dana, Steinmetz, Lars M., Fay, Justin C.

Journal:

Year:

2013

Language:

english

File:

PDF, 1.64 MB

english, 2013

28

Trajectories of cell-cycle progression from fixed cell populations

Gut, Gabriele, Tadmor, Michelle D, Pe'er, Dana, Pelkmans, Lucas, Liberali, Prisca

Journal:

Year:

2015

Language:

english

File:

PDF, 1.87 MB

english, 2015

29

CD49b defines functionally mature Treg cells that survey skin and vascular tissues

Fan, Xiying, Moltedo, Bruno, Mendoza, Alejandra, Davydov, Alexey N., Faire, Mehlika B., Mazutis, Linas, Sharma, Roshan, Pe’er, Dana, Chudakov, Dmitriy M., Rudensky, Alexander Y.

Journal:

Journal of Experimental Medicine

Year:

2018

Language:

english

File:

PDF, 3.31 MB

english, 2018

30

Natural Genetic Variation Reveals Key Features of Epigenetic and Transcriptional Memory in Virus-Specific CD8 T Cells

van der Veeken, Joris, Zhong, Yi, Sharma, Roshan, Mazutis, Linas, Dao, Phuong, Pe’er, Dana, Leslie, Christina S., Rudensky, Alexander Y.

Journal:

Year:

2019

Language:

english

File:

PDF, 5.39 MB

english, 2019

31

Learning a Prior on Regulatory Potential from eQTL Data

Lee, Su-In, Dudley, Aimée M., Drubin, David, Silver, Pamela A., Krogan, Nevan J., Pe'er, Dana, Koller, Daphne, Moses, Alan M.

Journal:

Year:

2009

Language:

english

File:

PDF, 2.46 MB

english, 2009

32

Detection of minimal residual disease in B lymphoblastic leukemia using viSNE

DiGiuseppe, Joseph A., Tadmor, Michelle D., Pe'er, Dana

Journal:

Cytometry Part B: Clinical Cytometry

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

33

Single-cell mass cytometry of TCR signaling: Amplification of small initial differences results in low ERK activation in NOD mice

Mingueneau, Michael, Krishnaswamy, Smita, Spitzer, Matthew H., Bendall, Sean C., Stone, Erica L., Hedrick, Stephen M., Pe'er, Dana, Mathis, Diane, Nolan, Garry P., Benoist, Christophe

Journal:

Proceedings of the National Academy of Sciences

Year:

2014

Language:

english

File:

PDF, 1.20 MB

english, 2014

34

Normalization of mass cytometry data with bead standards

Finck, Rachel, Simonds, Erin F., Jager, Astraea, Krishnaswamy, Smita, Sachs, Karen, Fantl, Wendy, Pe'er, Dana, Nolan, Garry P., Bendall, Sean C.

Journal:

Cytometry Part A

Year:

2013

Language:

english

File:

PDF, 4.20 MB

english, 2013

35

[ACM Press the fourth annual international conference - Tokyo, Japan (2000..-..)] Proceedings of the fourth annual international conference on Computational molecular biology - RECOMB '00 - Using Bayesian networks to analyze expression data

Friedman, Nir, Linial, Michal, Nachman, Iftach, Pe'er, Dana

Year:

2000

Language:

english

File:

PDF, 931 KB

english, 2000

36

Modulatory profiling identifies mechanisms of small molecule-induced cell death

Adam J. Wolpaw, Kenichi Shimada, Rachid Skouta, Matthew E. Welsch, Uri David Akavia, Dana Pe'er, Fatima Shaik, J. Chloe Bulinski and Brent R. Stockwell

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 449 KB

english, 2011

37

Single Cell T Cell Maps of Donor Lymphocyte Infusion (DLI) Response and Resistance

Bachireddy, Pavan, Azizi, Elham, Nguyen, Vinhkhang N, Li, Shuqiang, Neuberg, Donna, Soiffer, Robert J., Ritz, Jerome, Alyea, Edwin P., Pe'er, Dana, Wu, Catherine

Journal:

Biology of Blood and Marrow Transplantation

Year:

2019

File:

PDF, 62 KB

2019

38

JISTIC: Identification of Significant Targets in Cancer

Felix Sanchez-Garcia, Uri David Akavia, Eyal Mozes, Dana Pe'er

Journal:

BMC Bioinformatics

Year:

2010

Language:

english

File:

PDF, 1.11 MB

english, 2010

39

An Integrated Approach to Uncover Drivers of Cancer

Uri David Akavia, Oren Litvin, Jessica Kim, Felix Sanchez-Garcia, Dylan Kotliar, Helen C. Causton, Panisa Pochanard, Eyal Mozes, Levi A. Garraway, Dana Pe'er

Journal:

Year:

2010

Language:

english

File:

PDF, 2.84 MB

english, 2010

40

Learning Signaling Network Structures with Sparsely Distributed Data

Sachs, Karen, Itani, Solomon, Carlisle, Jennifer, Nolan, Garry P., Pe'er, Dana, Lauffenburger, Douglas A.

Journal:

Journal of Computational Biology

Year:

2009

Language:

english

File:

PDF, 639 KB

english, 2009

41

Negative Co-stimulation Constrains T Cell Differentiation by Imposing Boundaries on Possible Cell States

Wei, Spencer C., Sharma, Roshan, Anang, Nana-Ama A.S., Levine, Jacob H., Zhao, Yang, Mancuso, James J., Setty, Manu, Sharma, Padmanee, Wang, Jing, Pe’er, Dana, Allison, James P.

Journal:

Year:

2019

File:

PDF, 6.22 MB

2019

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